CMP Datasets

Micromolecules: definitions & links Cellular domains: Genome, preoteome & metabolome
Metabolic diversity: Scale, dynamics, & phyletics Phenotyping strategies: proteomics vs metabolomics
CMP Platforms: Platforms and workflow overview CMP Probes: The probe library
CMP Substrates: Molecular trapping & detection CMP Datasets: Data arrays for multichannel imaging
CMP Analysis: pattern recognition theory and tools CMP Exploration: N-space visualization tools
CMP Annotation: browsing & annotating data


IMAGE REGISTRATION TEST SETS
Raw, unregistered 8-bit tiff series
Details: Serial 250 nm resin tissue sections.
Image capture resolution = 476 nm/pixel. Post-cap operations: INVERT
Images with B, TT and E signals are easiest to align. G is the most difficult in this set

Capture Series (Win: right-click > save as; Mac: Ctrl-click, save as)

  1. 2366_D01.tif
  2. 2366_G01.tif
  3. 2366_B01.tif
  4. skipped
  5. 2366_E01.tif
  6. 2366_Q01.tif
  7. 2366_B02.tif
  8. 2366_TT01.tif
  9. 2366_E02.tif
  10. 2366_YY01.tif
  11. 2366_B03.tif
  12. 2366_G02.tif
Registered 8-bit tiff series
  1. 2366REG_D01.tif
  2. 2366REG_G01.tif
  3. 2366REG_B01.tif
  4. skipped
  5. 2366REG_E01.tif
  6. 2366REG_Q01.tif
  7. 2366REG_B02.tif
  8. 2366REG_TT01.tif
  9. 2366REG_E02.tif
  10. 2366REG_YY01.tif
  11. 2366REG_B03.tif
  12. 2366REG_G02.tif

 

IMAGE CLASSIFICATION JEWEL SETS
IMAGE CLASSIFICATION WITH PCI
Files: full sized files 1350 x 964, 8-bits grey, background-masked, contrast-stretched 60-220

Classification parameters
PCI: Isodata, Clus(max 20, est 16, min 12), convergence 0.01, sample 20%, seed diagonal
Morphias: Kmeans, 12 clus, sample 10%, seed random
Theme Maps harmonized in GraphicConverter 5.6.2X for Mac OS 10.4 www.lemkesoft.com

↑ PCI = 11 classes
Full size indexed tiff: Marc_2366_original_PCI_map.tif