Bryan W. Jones

Personal site: Jonesblog

PI: Bryan William Jones, Ph.D. – Publications

NUDC Is Critical For Rod Photoreceptor Function, Maintenance, And Survival
Mary Anne Garner, Meredith G. Hubbard, Evan R. Boitet, Seth T. Hubbard, Anushree Gade, Guoxin Ying, Bryan W. Jones, Wolfgang Baehr, Alecia K. Gross
The FASEB Journal 2024 Mar 15;38(5):e23518. doi: 10.1096/fj.202301641RR
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Modeling complex age-related eye disease
Silke Becker, Zia L’Ecuyer, Bryan W Jones, Moussa A Zouache, Fiona S McDonnell, Frans Vinberg
Progress in Retinal and Eye Research 2024 PubMed Direct Link PDF

Neural Circuit Revision in Retinal Remodeling, A Pathoconnectomics Approach
Rebecca L Pfeiffer, Jeebika Dahal, Crystal L Sigulinsky, James R Anderson, Isabel A Barrera, Jia-Hui Yang, Olivia Haddadin, Alexis R Houser, Jessica C Garcia, Bryan William Jones
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Unbalanced Redox Status Network As An Early Pathological Event In Congenital Cataracts
Eloy Bejarano, Elizabeth A Whitcomb, Rebecca L Pfeiffer, Kristie L Rose, Maria José Asensio, José Antonio Rodríguez-Navarro, Alejandro Ponce-Mora, Antolín Canto, Inma Almansa, Kevin L Schey, Bryan W. Jones, Allen Taylor, and Sheldon Rowan
Redox Biology, 102869
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Metabolic changes and retinal remodeling in Heterozygous CRX mutant cats (CRXRDY/+)
Laurence M. Occelli, Bryan W. Jones @BWJones, Taylor J. Cervantes, and Simon M. Petersen-Jones
Experimental Eye Research 2023 Aug 23;109630. doi: 10.1016/j.exer.2023.109630
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Retinal Pathoconnectomics: A Window into Neurodegeneration
Rebecca L Pfeiffer, Bryan W Jones
Chapter: Retinal Degenerative Diseases XIX: Mechanisms and Experimental Therapy
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Elastin Layer in Bruch’s Membrane as a Target for Immunization or Tolerization to Modulate Pathology in the Mouse Model of Smoke-Induced Ocular Injury
Bärbel Rohrer, Nathaniel Parsons, Balasubramaniam Annamalai, Crystal Nicholson, Elisabeth Obert, Bryan Jones, Andrew D Dick
Chapter: Retinal Degenerative Diseases XIX: Mechanisms and Experimental Therapy
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Impact of Retinal Degeneration on Response of ON and OFF Cone Bipolar Cells to Electrical Stimulation
Shayan Farzad, Pragya Kosta, Ege Iseri, Steven T Walston, Jean-Marie C Bouteiller, Rebecca L Pfeiffer, Crystal L Sigulinsky, Jia-Hui Yang, Jessica C Garcia, James R Anderson, Bryan W Jones, Gianluca Lazzi
IEEE Trans Neural Syst Rehabil Eng. 2023;31:2424-2437. doi: 10.1109/TNSRE.2023.3276431. Epub 2023 May 26.
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Distinctive Synaptic Structural Motifs Link Excitatory Retinal Interneurons To Diverse Postsynaptic Partner Types
Wan-Qing Yu, Rachael Swanstrom, Crystal L. Sigulinsky, Richard M. Ahlquist, Sharm Knecht, Bryan W. Jones, David M. Berson, and Rachel O. Wong.
Cell Reports, VOLUME 42, ISSUE 1, 112006, JANUARY 31, 2023
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Current Perspective on Retinal Remodeling: Implications for Therapeutics
Rebecca L. Pfeiffer and Bryan W. Jones
Frontiers in Neuroanatomy, 22 December 2022
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Revival of light signalling in the postmortem mouse and human retina
Fatima Abbas, Silke Becker, Bryan W. Jones, Ludovic S. Mure, Satchidananda Panda, Anne Hanneken & Frans Vinberg
Nature May 11 2022
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Peptide-Based Immunotherapy Against Oxidized Elastin Ameliorates Pathology In Mouse Model Of Smoke-Induced Ocular Injury
Bärbel Rohrer, Nathaniel Parsons , Balasubramaniam Annamalai , Crystal Nicholson , Elisabeth Obert , Bryan Jones, and Andrew D Dick.
Experimental Eye Research September 4, 2021, 108755
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Primary Cilia in Amacrine Cells in Retinal Development
Ke Ning, Brent E. Sendayen, Tia J. Kowal, Biao Wang, Bryan W. Jones, Yang Hu, Yang Sun.
Investigative Ophthalmology & Visual Science 62 (9), 15-15. 2021.
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Natural immunoglobulin M-based delivery of a complement alternative pathway inhibitor in mouse models of retinal degeneration
Balasubramaniam Annamalai, Nathaniel Parsons, Crystal Nicholson, Kusumam Joseph, Beth Coughlin, Xiaofeng Yang, Bryan W Jones, Stephen Tomlinson, Bärbel Rohrer
Experimental Eye Research April 18, 2021
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Subretinal Rather Than Intravitreal Adeno-Associated Virus–Mediated Delivery of a Complement Alternative Pathway Inhibitor Is Effective in a Mouse Model of RPE Damage
Balasubramaniam Annamalai, Nathaniel Parsons, Crystal Nicholson, Elisabeth Obert, Bryan Jones, Bärbel Rohrer
Investigative Ophthalmology & Visual Science Vol 62 4 April 1st, 2021
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Model-Based Comparison of Current Flow in Rod Bipolar Cells of Healthy and Early-Stage Degenerated Retina
Pragya Kosta, Ege Iseri, Kyle Loizos, Javad Paknahad, Rebecca L. Pfeiffer, Crystal L. Sigulinsky, James R. Anderson, Bryan W. Jones, and Gianluca Lazzi.
Exp Eye Res. March 30, 2021
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Chapter: Retinal Connectomics
Bryan W. Jones, and Robert E. Marc.
The Senses: A Comprehensive Reference, Second Edition, 2021 Elsevier
Book ISBN: 9780128054086 eBook ISBN: 9780128054093
Please email for a pdf

A pathoconnectome of early neurodegeneration: Network changes in retinal degeneration
Rebecca L. Pfeiffer, James R. Anderson, Jeebika Dahal, Jessica C Garcia, Jia-Hui Yang, Crystal L. Sigulinsky, Kevin Rapp, Daniel P. Emrich, Carl B. Watt, Hope AB Johnstun, Alexis R. Houser, Robert E. Marc, and Bryan W. Jones.
Exp Eye Res. Aug 15 2020, 199:108196
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Network architecture of gap junctional coupling among parallel processing channels in the mammalian retina
Crystal L. Sigulinsky, James R. Anderson, Ethan Kerzner, Christopher N. Rapp, Rebecca L. Pfeiffer, Taryn M. Rodman, Daniel P. Emrich, Kevin D. Rapp, Noah T. Nelson, J. Scott Lauritzen, Miriah Meyer, Robert E. Marc, and Bryan W. Jones.
J. Neurosci 3 June 2020, 40 (23) 4483-4511
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Immunization Against Oxidized Elastin Exacerbates Structural and Functional Damage in Mouse Model of Smoke-Induced Ocular Injury
Balasubramaniam Annamalai; Crystal Nicholson; Nathaniel Parsons; Sarah Stephenson; Carl Atkinson; Bryan Jones; Bärbel Rohrer
Investigative Ophthalmology & Visual Science March 2020, Vol.61, 45.
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Müller Cell Metabolic Signatures: Evolutionary Conservation and Disruption in Disease
Rebecca L. Pfeiffer, Robert E. Marc, and Bryan W. Jones
Trends in Endocrinology & Metabolism Feb. 24 doi: 10.1016/j.tem.2020.01.005
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Optic cup morphogenesis requires neural crest-mediated basement membrane assembly
Chase D. Bryan, Macaulie A. Casey, Rebecca L. Pfeiffer, Bryan W. Jones, Kristen M. Kwan
Development 2020 : dev.181420 doi: 10.1242/dev.181420 Published 27 January 2020
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Pathoconnectome Analysis of Müller Cells in Early Retinal Remodeling
Rebecca L Pfeiffer, James R Anderson, Daniel P Emrich, Jeebika Dahal, Crystal L Sigulinsky, Hope AB Morrison, Jia-Hui Yang, Carl B Watt, Kevin D Rapp, Mineo Kondo, Hiroko Terasaki, Jessica C Garcia, Robert E Marc, Bryan W Jones
Chapter: Retinal Degenerative Diseases pp365-370 2019 PubMed Direct Link PDF

An Update on Retinal Prostheses
Lauren N Ayton, Nick Barnes, Gislin Dagnelie, Takashi Fujikado, Georges Goetz, Ralf Hornig, Bryan W Jones, Mahiul MK Muqit, Daniel L Rathbun, Katarina Stingl, James D Weiland, Matthew A Petoe
Clinical Neurophysiology December 10, 2019 PubMed Direct Link PDF

Contrast sensitivity isocontours of the central visual field
Agnes YJ Choi, Lisa Nivison-Smith, Jack Phu, Barbara Zangerl, Sieu K Khuu, Bryan W Jones, Rebecca L Pfeiffer, Robert E Marc, Michael Kalloniatis
Scientific reports 9 (1), 1-14 2019 PubMed Direct Link PDF

Persistent remodeling and neurodegeneration in late-stage retinal degeneration
RL Pfeiffer, RE Marc, BW Jones
Progress in Retinal and Eye Research 2019 PubMed Direct Link PDF

Development of a spatial model of age-related change in the macular ganglion cell layer to predict function from structural changes
Janelle Tong, Jack Phu, Sieu K Khuu, Nayuta Yoshioka, Agnes Y Choi, Lisa Nivison-Smith, Robert E Marc, Bryan W Jones, Rebecca L Pfeiffer, Michael Kalloniatis, Barbara Zangerl
American journal of ophthalmology 2019 PubMed Direct Link PDF

Hypoxia tolerance in the Norrin-deficient retina and the chronically hypoxic brain studied at single-cell resolution
Jacob S Heng, Amir Rattner, Genevieve L Stein-O’Brien, Briana L Winer, Bryan W Jones, Hilary J Vernon, Loyal A Goff, Jeremy Nathans
Proceedings of the National Academy of Sciences 116 (18), 9103-9114 2019                         PubMed Direct Link PDF

Increasing Electrical Stimulation Efficacy in Degenerated Retina: Stimulus Waveform Design in a Multiscale Computational Model. Kyle Loizos, Robert Marc, Mark Humayun, James R Anderson, Bryan W Jones, Gianluca Lazzi. IEEE Transactions on Neural Systems and Rehabilitation Engineering 26 6 1111-1120. PubMed Direct Link PDF

Corticostriatal circuit defects in Hoxb8 mutant mice. Nagarajan N, Jones BW, West PJ, Marc RE, Capecchi MR. Mol Psychiatry. 2017 Sep 26. doi: 10.1038/mp.2017.180. PubMed Direct Link PDF

Pattern Recognition Analysis Reveals Unique Contrast Sensitivity Isocontours Using Static Perimetry Thresholds Across The Visual Field. 2017 J Phu, S Khuu, L Nivison-Smith, B Zangerl, A Yiu, J Choi, BW Jones, R Pfeiffer, R Marc, and M Kalloniatis. Invest Ophthalmol Vis Sci. 2017;58:4863–4876. DOI:10.1167/ iovs.17-22371 PubMed NCBI PDF

Pattern Recognition analysis of age-related retinal ganglion cell signatures in the human eye. 2017 N Yoshioka, B Zangerl, L Nivison-Smith, SK Khuu, BW Jones, RL Pfeiffer, RE Marc, M Kalloniatis Invest Ophthalmol Vis Sci. 2017 Jun 1;58(7):3086-3099. doi: 10.1167/iovs.17-21450. PubMed Direct Link PDF

Photoreceptor Outer Segment-like Structures in Long-Term 3D Retinas from Human Pluripotent Stem Cells. K. Wahlin, J. Maruotti, S. Srinpathi, J. Ball, J. Angueyra, C. Kim, R. Grebe, W. Li, B.W. Jones, D. Zack. 2017 Nature Scientific Reports 766 doi:10.1038/s41598-017-00774-9 PubMed Direct Link PDF

Graffinity: Visualizing Connectivity in Large Graphs. E. Kerzner, A. Lex, C. Sigulinsky, T. Urness, B.W. Jones, R.E. Marc, M. Meyer. (2017)  EuroVis 2017 Vol 36, Number 3 PMCID Direct LInk PDF

Retinal Degeneration, Remodeling and Plasticity. B.W. Jones, R.E. Marc, R.L. Pfeiffer. Webvision 2016 Direct Link PubMed

Rod-cone crossover connectome of mammalian bipolar cells. J.S. Lauritzen, C.L. Sigulinsky, J.R. Anderson, M. Kalloniatis, N.T. Nelson, D.P. Emrich, C. Rapp, N. McCarthy, E. Kerzner, M. Meyer, B.W. Jones, R.E. Marc (2016)  Journal Comparative Neurology. PubMed Direct Link PDF

Editorial: Special issue on retinal remodeling. B.W. Jones and G. P. Lewis. Experimental Eye Research 2016 PubMed PubMed Direct Link PDF

Retinal Remodeling and Metabolic Alterations in Human AMD. B.W. Jones, R.L. Pfeiffer, W.D. Ferrell, C.B. Watt, J. Tucker, R.E. Marc (2016)  Frontiers in cellular neuroscience. PubMed Direct Link PDF

Müller cell metabolic chaos during retinal degeneration. R.L. Pfeiffer, R.E. Marc, B.W. Jones 2016 Experimental eye research 150, 62-70 PubMed Direct Link PDF

A Targeted Inhibitor of the Alternative Complement Pathway Accelerates Recovery From Smoke-Induced Ocular Injury. A. Woodell, B.W. Jones, T. Williamson, G. Schnabolk, S. Tomlinson, C. Atkinson, B. Rohrer (2016)  Investigative ophthalmology & visual science 57 (4), 1728-1737 PubMed Direct Link PDF

Retinal Remodeling in Human Retinitis Pigmentosa. B.W. Jones, R.L. Pfeiffer, W.D. Ferrell, C.B. Watt, M. Marmor, R.E. Marc (2016)Experimental eye research 150, 149-165. PubMed Direct Link PDF

Store-Operated Calcium Entry In Müller Glia Is Controlled By Synergistic Activation Of TRPC And Orai Channels. T. Molnár, O. Yarishkin, P. Barabas, A. Iuso, B.W. Jones, R. Marc, T. Phuong, and D. Krizaj. 2016  Journal of Neuroscience 36 (11), 3184-3198 PubMed Direct Link PDF

Eosinophilic Esophagitis in Two Patients with Systemic Sclerosis. T.M. Frech, K. Boynton, E. Downs-Kelly, B. Jones, J.D. Kriesel, K. Peterson 2016. Case reports in rheumatology 2016 PubMed PMCID PDF

Seasonal and post-trauma remodeling in cone-dominant ground squirrel retina. DK Merriman, BS Sajdak, W. Li, Jones BW 2016  Experimental Eye Research. doi 10.1016/j.exer.2016.01.011 PubMed Direct Link PDF

Development of Animal Models of Local Retinal Degeneration. H. Lorach, J. Kung, C. Beier, Y. Mandel, R. Dalal, P. Huie, J. Wang, S. Lee, A. Sher, B.W. Jones and D. Palanker (2015). 56(8): 4644-52. Invest Ophthalmol Vis Sci. PubMed Direct Link PDF

The AII Amacrine Cell Connectome: A Dense Network Hub. R.E. Marc, J.R. Anderson, B.W. Jones, C. Sigulinsky and J. Scott Lauritzen (2014).  Front Neural Circuits. PubMed Direct Link PDF

A Multi-Scale Computational Model For The Study of Retinal Prosthetic Stimulation. Kyle Loizos, Gianluca Lazzi, J. Scott Lauritzen, James R. Anderson, Bryan W. Jones and Robert E. Marc (2014).  IEEE Computer Graphics and Applications. PubMed Direct Link PDF

Retinal Prosthetics, optogenetics, and chemical photoswitches. R.E. Marc, R. Pfeiffer, B.W. Jones (2014). ACS Chem Neurosci. PubMed Direct Link PDF

Synapse Classification and Localization in Electron Micrographs. V. Jagadeesh, J. Anderson, B.W. Jones, R.E. Marc, S. Fisher and B.S. Manjunath 2014 2013. Pattern Recognition Letters. Direct Link PDF

Quantitative Analyses of Retinal Vascular Area and Density after Different Methods to Reduce VEGF in a Rat Model of Retinopathy of Prematurity. Wang H, Yang Z, Jiang Y, Flannery JG, Hammond S, Kafri T, Vemuri SK, Jones B, Hartnett ME (2014). Invest Ophthalmol Vis Sci. PubMed Direct Link PDF

Robust Segmentation based Tracking using an Adaptive Wrapper for Inducing Priors. Vignesh Jagadeesh, James Anderson, B.W.Jones, Robert E. Marc, Steven K Fisher and B.S Manjunath (2013).  IEEE Trans Image Process. Direct Link PDF

Alternative Complement Pathway Deficiency Amerliorates Chronic Smoked-Induced Functional And Morphological Ocular Injury. A. Woodell, B. Coughlin, K. Kunchithapautham, S. Casey, T. Williamson, W.D. Ferrell, C. Atkinson, B.W.Jones, B. Rohrer (2013).  PLoS ONE. PubMed Direct Link PDF

Retinal Connectomics: Towards Complete, Accurate Networks. Marc RE, Jones BW, Watt CB, C. Sigulinsky, Anderson JR, Lauritzen JS (2013).  Prog Retin Eye Res. PubMed Direct Link PDF

Restoration of Retinal Structure and Function After Selective Photocoagulation. A. Sher, B.W. Jones, P. Huie, Y. Paulus, L.S. Leung, H. Nomoto, R.E. Marc, D. Palanker (2013). J Neurosci. PubMed Direct Link PDF

The Role of ELOVL4 And Very Long Chain Polyunsaturated Fatty Acids In Mouse Models of Stargardt Type 3 Retinal Degeneration. P. Barabas, A. Liu, W. Xing, C-K. Jason Chen, Z. Tong, C. B. Watt, B.W. Jones, P. S Bernstein, D. Križaj (2013). Proc Natl Acad Sci U S A. PubMed Direct Link PDF

ON cone bipolar cell axonal synapses in the OFF inner plexiform layer of the rabbit retina. Lauritzen JS, Anderson JR, Jones BW, Watt CB, Mohammed S, Hoang JV, Marc RE (2013). J Comp Neurol. PubMed Direct Link PDF

Retinal Connectomics: A new era for connectivity analysis. Marc RE, Jones BW, Lauritzen JS, Watt CB, Anderson JR. 2013 New Visual Neurosciences.

Retinal Remodeling. B.W. Jones, M. Kondo, H. Terasaki, Y. Lin, M. McCall, R.E. Marc (July 2012). Jpn J Ophthalmol, 56(4), 289-306. PubMed Direct Link PDF

Computational molecular phenotyping of retinal sheet transplants to rats with retinal degeneration. Seiler MJ, Jones BW, Aramant RB, Yang PB, Keirstead HS, Marc RE (June 2012). Eur J Neurosci, 35(11), 1692-1704. PubMed Direct Link PDF

Building retinal connectomes. Marc RE, Anderson JR, Jones BW, Watt CB (April 2012). Curr Opin Neurobiol. PubMed Direct Link PDF

Rapid glutamate receptor 2 trafficking during retinal degeneration. Lin Y, Jones BW, Liu A, Vazquez-Chona FR, Lauritzen JS, Ferrell WD, Marc RE (February 2012).  Mol Neurodegener. Feb 10 doi: 10.1186. PubMed Direct Link PDF

Dysmorphic Photoreceptors in a P23H Mutant Rhodopsin Model of Retinitis Pigmentosa are Metabolically Active and Capable of Regenerating to Reverse Retinal Degeneration. D. Lee, F.V-Chona, W. Ferrell, B. Tam, B.W. Jones, R.E. Marc, O. Moritz (February 2012). J Neurosci, 32(6), 2121-2128. PubMed Direct Link PDF

Generation of an inbred miniature pig model of retinitis pigmentosa. Ross JW, Fernandez de Castro JP, Zhao J, Samuel M, Walters E, Rios C, Bray-Ward P, Jones BW, Marc RE, Wang W, Zhou L, Noel JM, McCall MA, DeMarco PJ, Prather RS, Kaplan HJ (January 2012). Invest Ophthalmol Vis Sci, 53(1), 501-507. PubMed Direct Link PDF

Online parameter estimation in dynamic Markov Random Fields for image sequence analysis. V Jagadeesh, BS Manjunath, J Anderson, B Jones, R Marc, SK Fisher (2012). ICIP. Direct Link PDF

Retinal Remodeling in the Tg P347L Rabbit, a Large-Eye Model of Retinal Degeneration. B.W. Jones, M. Kondo, H. Terasaki, C.B. Watt, K. Rapp, J. Anderson, Y. Lin, M.V. Shaw, J-H Yang, R.E. Marc (October 2011). J Comp Neurol, 519(14). PubMed Direct Link PDF

Retinoid Receptors Trigger Neuritogenesis in Retinal Degenerations. Y. Lin, B.W. Jones, A. Liu, J.F. Tucker, K. Rapp, L. Luo, W. Baehr, P.S. Bernstein, C.B. Watt, J-H Yang, M.V. Shaw, R.E. Marc (September 2011). FASEB J. PubMed Direct Link PDF

Automatic mosaicking and volume assembly for high-throughput serial-section transmission electron microscopy. T. Tasdizen, P. Koshevoy, B. Grimm, J. Anderson, B.W. Jones, R.T. Whitaker, R.E. Marc (2010). J Neurosci Methods. PubMed Direct Link PDF

Exploring The Retinal Connectome. J.R. Anderson, B.W. Jones, C.B. Watt, M.V. Shaw, J-H. Yang, D. DeMill, J.S. Lauritzen, Y. Lin, Kevin D. Rapp, D. Mastronarde, P. Koshevoy, B. Grimm, T. Tasdizen, R. Whitaker, R.E. Marc (2010). Mol Vis. PubMed Direct Link PDF

Detection of neuron membranes in electron microscopy images using auto-context. Jurrus E, Paiva ARC, Watanabe S, Jorgensen EM, Anderson JR, Jones BW, Whitaker R, Marc R, Tasdizen T (2010). Med Image Anal. PubMed Direct Link PDF

The Viking viewer for connectomics: scalable multi-user annotation and summarization of large volume data sets. Anderson JR, Mohammed S, Grimm B, Jones BW, Koshevoy P, Tasdizen T, Whitaker R, Marc (2010). J Microsc. PubMed Direct Link PDF

A computational framework for ultrastructural mapping of neural circuitry. Anderson JR, Jones BW, Yang J-H, Shaw MV, Watt CB, Koshevoy P, Spaltenstein J, Jurrus E, Kannan UV, Whitaker R, Mastronarde D, Tasdizen T, Marc R 2008 PLoS Biol 7(3): e1000074 [doi:10.1371/journal.pbio.1000074].  PubMed Direct Link PDF  8.6 Mb PDF

An optimal-path approach for neural circuit reconstruction. E. Jurrus, R. Whitaker, B. W. Jones, R. Marc, and T. Tasdizen (2008). IEEE Biomedical Engineering Days. 1609-1612. PubMed Direct Link PDF

Effect of shape and coating of a subretinal prosthesis on its integration with the retina. Experimental Eye Research Butterwick A, Huie P, Jones BW, Marmor MF, Marc RE, Palanker D. 2008. Experimental Eye Research. 2009 88(1):22-9 PubMed Direct Link PDF

Extreme Retinal Remodeling Triggered by Light Damage: Implications for AMD. RE Marc, BW Jones, CB Watt, F. Vazquez-Chona, DK Vaughan, DT Organisciak. Molecular Vision 14:782-806. PubMed Direct Link PDF . PubMed Direct Link PDF

Neural reprogramming in retinal degenerations. Marc RE, BW Jones, JR Anderson, K Kinard, DW Marshak, JH Wilson, TG Wensel, RJ Lucas 2007  Invest Ophthalmol Vis Sci. PubMed Direct Link PDF PubMed Direct Link PDF

Assembly of large three-dimensional volumes from serial-section transmission electron microscopy. Koshevoy P, Tasdizen T, Whitaker R, Jones BW, Marc RE. 2006 Proceedings of 2006 MICCAI Workshop on Microscopic Image Analysis with Applications in Biology. PDF

Review: Retinal Remodeling During Retinal Degeneration. Jones BW, Marc RE. Experimental Eye Research 2005, 81: 121-244. PubMed Direct Link PDF

Excitation mapping with the organic cation AGB2+. Marc RE, M Kalloniatis, and BW Jones. 2005. Vision Research, 45: 3454-3468. PubMed Direct Link PDF

Retinal remodeling. Jones BW, CB Watt and RE Marc. 2005. Clinical and Experimental Optometry 88: 282-291. PubMed Direct Link PDF

Chapter: Neural plasticity revealed by light-induced photoreceptor lesions. BW Jones, RE Marc, CB Watt, DK Vaughan, DT Organisciak. PDF  Amazon: Retinal Degenerative Diseases, Springer, (New York), pp. 405-410. 2005. Springer Retinal Degenerative Diseases, Springer, (New York), pp. 405-410. 2005.

Circuitry revisions triggered by photoreceptor degeneration. In Plasticity in the Visual system: Marc RE, BW Jones and CB Watt. 2005. Amazon: From Genes to Circuits. Eds, Pinaud et al., Springer, pp. 33-54. 2005.

Neural Remodeling in Retinal Degeneration. Marc RE, BW Jones, CB Watt and E Strettoi. Progress in Retinal and Eye Research, pp. 607-655 Sep; 22(5) 2003. PubMed Direct Link PDF

Retinal remodeling in inherited photoreceptor degenerations. Marc RE, BW Jones Molecular Neurobiology 28: 139-148 2003. PubMed Direct Link PDF

Retinal remodeling triggered by photoreceptor degenerations. Jones BW, Watt CB, Frederick JM, Baehr W, Chen CK, Levine EM, Milam AH, LaVail MM, Marc RE. Journal of Comparative Neurology pp. 1-16 Sep, 8;464(1) 2003. PubMed Direct Link PDF

Phenotyping neurons with pattern recognition of molecular mixtures. Marc RE, BW Jones 2003 IEEE, Intermational Symposium on Signal Processing and its Applications, S1571. PDF

Molecular phenotyping of retinal ganglion cells. RE Marc and BW Jones. The Journal of Neuroscience. pp 413-427 Jan, 15 22(2) 2002. PubMed Direct Link PDF

Familial advanced sleep-phase syndrome: A short-period circadian rhythm variant in humans. pp 1062-1065 CR Jones, SS Campbell, SE Zone, F Cooper, A DeSano, PJ Murphy, B Jones, L Czajkowski & Louis J. Ptacek. Nature Medicine 2000. PubMed Direct Link PDF

Technical Reports

Tolga Tasdizen, Ross Whitaker, Robert Marc and Bryan Jones, “Automatic Correction of Non-uniform Illumination in Transmission Electron Microscopy Images“, SCI Institute Technical Report, UUSCI-2005-008, University of Utah, September, 2005.