0.1 Start the camera & double-click the Syncroscan start icon |
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0.2 Syncroscan has two adjustable windows: Left = scan window, Right = live image |
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0.3 The basic top-level menu and icons |
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0.4 Scan window menu and icon items |
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- view stage: Shows an overview of the physical scanning stage area. Zoomable.
- view pattern: Shows an overview of the scanning pattern area. Zoomable.
shows where the live image is positioned in the scan window.
- show borders: Outlines the scan pattern. LEAVE ON.
- create a scan pattern: Click-drag in the field to create scan areas.
- move stage: Moves stage to wherever you click in the scan field. VERY POWERFUL.
- zoom: With view stage, it has a coarse upper limit. With view pattern, it can zoom to pixels.
- adjust pattern: moves the whole scan pattern around.
- erase pattern: erases the pattern
- erase images: erases scanned images from the scan window. VERY IMPORTANT.
- start scan: starts scan
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0.5 Live-image window icon items |
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The only tool of importance for the live window is the zoom toggle. |
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0.6 Joystick control window |
Make sure that the magnification setting droplist matches the actual nosepiece position. |
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PREVIEW SCANNING: Step 1 … Syncroscan Protocol Setup |
1 Turn microscope power supply ON. If alarm persists, turn power UP, then DOWN. |
2 Turn on camera. |
3 Start Syncroscan RT. If you get the error “No camera detected” then:
- close Syncroscan RT
- start the camera
- restart Syncroscan RT
Also make sure Syncroscan RT isn’t already running, as Windows will try to launch another instance of the program but only one will work properly. |
4 Set nosepiece at the 5x & swing the condenser out. Achieve a clear field with prism (50 or 100%), grey filter & voltage as needed. Drop stage slightly with left knob. |
5 Select Controls → Stage → Init.
This will initialize the stage (essential). Watch carefully as the stage moves to make sure it does not hit objectives. |
6 Place slide in stage clips, flush left. |
7 Test: Select File → Open Scan Pattern → spot_01.pat. Select the move button. Click anywhere in the pattern. The stage should drive to spot 01. If it does not, STOP. If it does, CONTINUE. Select spot_02.pat. If the stage drives correctly to both spots you may continue. |
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Preview Scanning: Step 2 … Scanning an Entire Slide |
2.1 After initialization (Step 1), select erase pattern and erase images. |
2.2 Adjust lighting as needed and focus the image in the Live image window. |
2.3 Select the Navigator.
Make sure that the “Enable Navigator Mode” box is checked. Click “Load Group” and load 12_spot.oig. You should see 12 patterns listed. |
2.4 Select the Setup button to open the Setup dialog and follow these steps
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2.5 Select the Scan button, select “RT” and wait until all spots are scanned |
2.6 Select File → Save Workspace as… “filename.sws” in folder “Preview”.
Use these filename rules
- Filename = NNNN_iii_xxx_s##_t##_ppp_mmm.tif
- NNNN = 4 numerics slide number (example: 3665)
- iii = your initals (example: rem)
- xxx = magnification or resolution (example: 5x or 1000r)
- pre# = preview # (e.g. preview 01, 02, 03 etc)
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Preview Scanning: Step 3 … Scanning a selected set of spots |
3.1 After initialization (Step 1), select erase pattern and erase images. |
3.2 Select view stage/b> and zoom in or out as needed |
3.3 Select File → Open Scan Pattern → spot_xx.pat, where xx=the number of the spot you wish to scan. |
3.4 Select the move button. Click anywhere in the pattern. The stage should drive there. If it does not, STOP. If it does, CONTINUE. |
3.5 Select view pattern button. Click in the first box and focus the Live image with the coarse left-hand focus. Adjust lighting if needed. |
3.6 Use Setup to make sure that “Enable Auto Focus” is unchecked: OFF. |
3.7 Select Scan and |
3.8 When scanning is done, use create a scan pattern around the area you wish to capture. |
3.9 Use move stage to position the cursor somewhere in the image for focusing |
3.10 Switch the condenser in, switch the mag to 10x, adjust lighting and focus |
3.10 Make sure the Joystick control window is set at 10x |
3.11 Use Setup to make sure that “Enable Auto Focus” is checked: ON. |
3.12 Use move stage to position the cursor in box 1 (upper left) |
3.13 Focus |
3.14 Select Scan in the normal (not RT) mode |
3.15 Select File → Save Workspace as… “filename.sws” in folder “Preview”.
Use these filename rules
- Filename = NNNN_iii_xxx_pre#_ss_pp.tif
- NNNN = 4 numerics slide number (example: 3665)
- iii = your initals (example: rem)
- xxx = magnification or resolution (example: 10x or 725r)
- pre# = preview # (example: preview 01, 02, 03 etc)
- ss = spot (example: 01 … 12)
- pp = probe code (example: A, E, tt, ….)
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