2020- [26]

Unbalanced Redox Status Network As An Early Pathological Event In Congenital Cataracts
Eloy Bejarano, Elizabeth A Whitcomb, Rebecca L Pfeiffer, Kristie L Rose, Maria José Asensio, José Antonio Rodríguez-Navarro, Alejandro Ponce-Mora, Antolín Canto, Inma Almansa, Kevin L Schey, Bryan W. Jones, Allen Taylor, and Sheldon Rowan
Redox Biology, 102869
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Metabolic changes and retinal remodeling in Heterozygous CRX mutant cats (CRXRDY/+)
Laurence M. Occelli, Bryan W. Jones, Taylor J. Cervantes, and Simon M. Petersen-Jones
Experimental Eye Research 2023 Aug 23;109630. doi: 10.1016/j.exer.2023.109630
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Retinal Pathoconnectomics: A Window into Neurodegeneration
Rebecca L Pfeiffer, Bryan W Jones
Chapter: Retinal Degenerative Diseases XIX: Mechanisms and Experimental Therapy
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Elastin Layer in Bruch’s Membrane as a Target for Immunization or Tolerization to Modulate Pathology in the Mouse Model of Smoke-Induced Ocular Injury
Bärbel Rohrer, Nathaniel Parsons, Balasubramaniam Annamalai, Crystal Nicholson, Elisabeth Obert, Bryan Jones, Andrew D Dick
Chapter: Retinal Degenerative Diseases XIX: Mechanisms and Experimental Therapy
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Impact of Retinal Degeneration on Response of ON and OFF Cone Bipolar Cells to Electrical Stimulation
Shayan Farzad, Pragya Kosta, Ege Iseri, Steven T Walston, Jean-Marie C Bouteiller, Rebecca L Pfeiffer, Crystal L Sigulinsky, Jia-Hui Yang, Jessica C Garcia, James R Anderson, Bryan W Jones, Gianluca Lazzi
IEEE Trans Neural Syst Rehabil Eng. 2023;31:2424-2437. doi: 10.1109/TNSRE.2023.3276431. Epub 2023 May 26.
PubMed Direct Link PDF

Distinctive Synaptic Structural Motifs Link Excitatory Retinal Interneurons To Diverse Postsynaptic Partner Types
Wan-Qing Yu, Rachael Swanstrom, Crystal L. Sigulinsky, Richard M. Ahlquist, Sharm Knecht, Bryan W. Jones, David M. Berson, and Rachel O. Wong.
Cell Reports, VOLUME 42, ISSUE 1, 112006, JANUARY 31, 2023
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Current Perspective on Retinal Remodeling: Implications for Therapeutics
Rebecca L. Pfeiffer and Bryan W. Jones
Frontiers in Neuroanatomy, 22 December 2022
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Revival of light signalling in the postmortem mouse and human retina
Fatima Abbas, Silke Becker, Bryan W. Jones, Ludovic S. Mure, Satchidananda Panda, Anne Hanneken & Frans Vinberg
Nature May 11 2022
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Peptide-Based Immunotherapy Against Oxidized Elastin Ameliorates Pathology In Mouse Model Of Smoke-Induced Ocular Injury
Bärbel Rohrer, Nathaniel Parsons , Balasubramaniam Annamalai , Crystal Nicholson , Elisabeth Obert , Bryan Jones, and Andrew D Dick.
Experimental Eye Research September 4, 2021, 108755
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Primary Cilia in Amacrine Cells in Retinal Development
Ke Ning, Brent E. Sendayen, Tia J. Kowal, Biao Wang, Bryan W. Jones, Yang Hu, Yang Sun.
Investigative Ophthalmology & Visual Science 62 (9), 15-15. 2021.
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Synaptic inputs to broad thorny ganglion cells in macaque retina
Bordt AS, Patterson SS, Girresch RJ, Perez D, Tseng L, Anderson JR, Mazzaferri MA, Kuchenbecker JA, Gonzales-Rojas R, Roland A, Tang C, Puller C, Chuang AZ, Ogilvie JM, Neitz J, Marshak DW.
J Comp Neurol. 2021 Apr 12. doi: 10.1002/cne.25156.
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Natural immunoglobulin M-based delivery of a complement alternative pathway inhibitor in mouse models of retinal degeneration
Balasubramaniam Annamalai, Nathaniel Parsons, Crystal Nicholson, Kusumam Joseph, Beth Coughlin, Xiaofeng Yang, Bryan W Jones, Stephen Tomlinson, Bärbel Rohrer
Experimental Eye Research April 18, 2021
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Subretinal Rather Than Intravitreal Adeno-Associated Virus–Mediated Delivery of a Complement Alternative Pathway Inhibitor Is Effective in a Mouse Model of RPE Damage
Balasubramaniam Annamalai, Nathaniel Parsons, Crystal Nicholson, Elisabeth Obert, Bryan Jones, Bärbel Rohrer
Investigative Ophthalmology & Visual Science Vol 62 4 April 1st, 2021
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Model-Based Comparison of Current Flow in Rod Bipolar Cells of Healthy and Early-Stage Degenerated Retina
Pragya Kosta, Ege Iseri, Kyle Loizos, Javad Paknahad, Rebecca L. Pfeiffer, Crystal L. Sigulinsky, James R. Anderson, Bryan W. Jones, and Gianluca Lazzi.
Exp Eye Res. March 30, 2021
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Chapter: Retinal Connectomics
Bryan W. Jones, and Robert E. Marc.
The Senses: A Comprehensive Reference, Second Edition, 2021 Elsevier
Book ISBN: 9780128054086 eBook ISBN: 9780128054093
Please email for a pdf

A pathoconnectome of early neurodegeneration: Network changes in retinal degeneration
Rebecca L. Pfeiffer, James R. Anderson, Jeebika Dahal, Jessica C Garcia, Jia-Hui Yang, Crystal L. Sigulinsky, Kevin Rapp, Daniel P. Emrich, Carl B. Watt, Hope AB Johnstun, Alexis R. Houser, Robert E. Marc, and Bryan W. Jones.
Exp Eye Res. Aug 15 2020, 199:108196
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Network architecture of gap junctional coupling among parallel processing channels in the mammalian retina
Crystal L. Sigulinsky, James R. Anderson, Ethan Kerzner, Christopher N. Rapp, Rebecca L. Pfeiffer, Taryn M. Rodman, Daniel P. Emrich, Kevin D. Rapp, Noah T. Nelson, J. Scott Lauritzen, Miriah Meyer, Robert E. Marc, and Bryan W. Jones.
J. Neurosci 3 June 2020, 40 (23) 4483-4511
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Immunization Against Oxidized Elastin Exacerbates Structural and Functional Damage in Mouse Model of Smoke-Induced Ocular Injury
Balasubramaniam Annamalai; Crystal Nicholson; Nathaniel Parsons; Sarah Stephenson; Carl Atkinson; Bryan Jones; Bärbel Rohrer
Investigative Ophthalmology & Visual Science March 2020, Vol.61, 45.
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Müller Cell Metabolic Signatures: EvolutionaryConservation and Disruption in Disease
Rebecca L. Pfeiffer, Robert E. Marc, and Bryan W. Jones
Trends in Endocrinology & Metabolism Feb. 24 doi: 10.1016/j.tem.2020.01.005
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A Color Vision Circuit for Non-Image-Forming Vision in the Primate Retina
Patterson SS, Kuchenbecker JA, Anderson JR, Neitz M, Neitz J.
Curr Biol : 2020 Feb 14. pii: S0960-9822(20)30084-1. doi: 10.1016/j.cub.2020.01.040.
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Optic cup morphogenesis requires neural crest-mediated basement membrane assembly
Chase D. Bryan, Macaulie A. Casey, Rebecca L. Pfeiffer, Bryan W. Jones, Kristen M. Kwan
Development 2020 : dev.181420 doi: 10.1242/dev.181420 Published 27 January 2020
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Wide-field amacrine cell inputs to ON parasol ganglion cells in macaque retina
Patterson SS, Bordt AS, Girresch RJ, Linehan CM, Bauss J, Yeo E, Perez D, Tseng L, Navuluri S, Harris NB, Matthews C, Anderson JR, Kuchenbecker JA, Manookin MB, Ogilvie JM, Neitz J, Marshak DW.
J Comp Neurol. 2020 Jun 15;528(9):1588-1598. doi: 10.1002/cne.24840.
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An Update on Retinal Prostheses
Lauren N Ayton, Nick Barnes, Gislin Dagnelie, Takashi Fujikado, Georges Goetz, Ralf Hornig, Bryan W Jones, Mahiul MK Muqit, Daniel L Rathbun, Katarina Stingl, James D Weiland, Matthew A Petoe
Clinical Neurophysiology June 1, 2020 PubMed Direct Link PDF

Revival of light-evoked neuronal signals in the post-mortem mammalian and human retina
Fatima Abbas, Silke Becker, Bryan William Jones, Ludovic S Mure, Satchidananda Panda, Anne Hanneken, Frans Vinberg
bioRxiv doi:

Computational approaches towards reducing contamination in single-cell RNA-seq data
Siamak Yousefi, Hao Chen, Jesse Ingles, Arthur Centeno, Sumana Chintalapudi, Megan Mulligan, Bryan Jones, Robert W Williams
bioRxiv doi:

A Pathoconnectome of Early Neurodegeneration
Rebecca L Pfeiffer, James R Anderson, Jeebika Dahal, Jessica C Garcia, Jia-Hui Yang, Crystal L Sigulinsky, Kevin Rapp, Daniel P Emrich, Carl B Watt, Hope Morrison, Alexis R Houser, Robert E Marc, Bryan W Jones
bioRxiv doi:

2010-2019 [60]

Pathoconnectome Analysis of Müller Cells in Early Retinal Remodeling
Rebecca L Pfeiffer, James R Anderson, Daniel P Emrich, Jeebika Dahal, Crystal L Sigulinsky, Hope AB Morrison, Jia-Hui Yang, Carl B Watt, Kevin D Rapp, Mineo Kondo, Hiroko Terasaki, Jessica C Garcia, Robert E Marc, Bryan W Jones
Chapter: Retinal Degenerative Diseases pp365-370 2019 PubMed Direct Link PDF

Contrast sensitivity isocontours of the central visual field
Agnes YJ Choi, Lisa Nivison-Smith, Jack Phu, Barbara Zangerl, Sieu K Khuu, Bryan W Jones, Rebecca L Pfeiffer, Robert E Marc, Michael Kalloniatis
Scientific reports 9 (1), 1-14 2019 PubMed Direct Link PDF

Persistent remodeling and neurodegeneration in late-stage retinal degeneration
RL Pfeiffer, RE Marc, BW Jones
Progress in Retinal and Eye Research 2019 PubMed Direct Link PDF

Development of a spatial model of age-related change in the macular ganglion cell layer to predict function from structural changes
Janelle Tong, Jack Phu, Sieu K Khuu, Nayuta Yoshioka, Agnes Y Choi, Lisa Nivison-Smith, Robert E Marc, Bryan W Jones, Rebecca L Pfeiffer, Michael Kalloniatis, Barbara Zangerl
American journal of ophthalmology 2019 PubMed Direct Link PDF

Hypoxia tolerance in the Norrin-deficient retina and the chronically hypoxic brain studied at single-cell resolution
Jacob S Heng, Amir Rattner, Genevieve L Stein-O’Brien, Briana L Winer, Bryan W Jones, Hilary J Vernon, Loyal A Goff, Jeremy Nathans
Proceedings of the National Academy of Sciences 116 (18), 9103-9114 2019                         PubMed Direct Link PDF

Increasing Electrical Stimulation Efficacy in Degenerated Retina: Stimulus Waveform Design in a Multiscale Computational Model
K Loizos, R Marc, M Humayun, JR Anderson, BW Jones, G Lazzi
IEEE Transactions on Neural Systems and Rehabilitation Engineering 26 (6) 1111-1120 PubMed Direct Link PDF

Neural crest cells regulate optic cup morphogenesis by promoting extracellular matrix assembly CD Bryan, RL Pfeiffer, BW Jones, KM Kwan
bioRxiv, 374470 Direct Link PDF

Heterocellular Coupling Between Amacrine Cells and Ganglion Cells. Robert E. Marc, Crystal Lynn Sigulinsky, Rebecca L. Pfeiffer, Daniel Emrich, James Russel Anderson, Bryan William Jones. Frontiers in Neural Circuits. 14, November 2018. doi: 10.3389/fncir.2018.00090 PubMed Direct Link PDF (in bioRxiv here)

Increasing Electrical Stimulation Efficacy in Degenerated Retina: Stimulus Waveform Design in a Multiscale Computational Model. Kyle Loizos, Robert Marc, Mark Humayun, James R Anderson, Bryan W Jones, Gianluca Lazzi. IEEE Transactions on Neural Systems and Rehabilitation Engineering 26 6 1111-1120. 2018 PubMed Direct Link PDF

Corticostriatal circuit defects in Hoxb8 mutant mice. Nagarajan N, Jones BW, West PJ, Marc RE, Capecchi MR. Mol Psychiatry. 2018 Sep 26. doi: 10.1038/mp.2017.180. PubMed Direct Link PDF

Pattern Recognition Analysis Reveals Unique Contrast Sensitivity Isocontours Using Static Perimetry Thresholds Across The Visual Field. 2017 J Phu, S Khuu, L Nivison-Smith, B Zangerl, A Yiu, J Choi, BW Jones, R Pfeiffer, R Marc, and M Kalloniatis. Invest Ophthalmol Vis Sci. 2017;58:4863–4876. DOI:10.1167/ iovs.17-22371 PubMed NCBI PDF

Pattern Recognition analysis of age-related retinal ganglion cell signatures in the human eye. 2017 N Yoshioka, B Zangerl, L Nivison-Smith, SK Khuu, BW Jones, RL Pfeiffer, RE Marc, M Kalloniatis Invest Ophthalmol Vis Sci. 2017 Jun 1;58(7):3086-3099. doi: 10.1167/iovs.17-21450. PubMed Direct Link PDF

Photoreceptor Outer Segment-like Structures in Long-Term 3D Retinas from Human Pluripotent Stem Cells. K. Wahlin, J. Maruotti, S. Srinpathi, J. Ball, J. Angueyra, C. Kim, R. Grebe, W. Li, B.W. Jones, D. Zack. 2017 Nature Scientific Reports 766 doi:10.1038/s41598-017-00774-9 PubMed Direct Link PDF

Graffinity: Visualizing Connectivity in Large Graphs. E. Kerzner, A. Lex, C. Sigulinsky, T. Urness, B.W. Jones, R.E. Marc, M. Meyer. (2017)  EuroVis 2017 Vol 36, Number 3 PMCID Direct LInkPDF

Retinal Degeneration, Remodeling and Plasticity. B.W. Jones, R.E. Marc, R.L. Pfeiffer. Webvision 2016 Direct Link PubMed

Rod-cone crossover connectome of mammalian bipolar cells. J.S. Lauritzen, C.L. Sigulinsky, J.R. Anderson, M. Kalloniatis, N.T. Nelson, D.P. Emrich, C. Rapp, N. McCarthy, E. Kerzner, M. Meyer, B.W. Jones, R.E. Marc (2016)  Journal Comparative Neurology. PubMed Direct Link PDF

Editorial: Special issue on retinal remodeling. B.W. Jones and G. P. Lewis. Experimental Eye Research 2016 PubMed PubMed Direct Link PDF

Retinal Remodeling and Metabolic Alterations in Human AMD. B.W. Jones, R.L. Pfeiffer, W.D. Ferrell, C.B. Watt, J. Tucker, R.E. Marc (2016)  Frontiers in cellular neuroscience. PubMedDirect Link PDF

Müller cell metabolic chaos during retinal degeneration. R.L. Pfeiffer, R.E. Marc, B.W. Jones 2016 Experimental eye research 150, 62-70 PubMed Direct Link PDF

A Targeted Inhibitor of the Alternative Complement Pathway Accelerates Recovery From Smoke-Induced Ocular Injury. A. Woodell, B.W. Jones, T. Williamson, G. Schnabolk, S. Tomlinson, C. Atkinson, B. Rohrer (2016)  Investigative ophthalmology & visual science 57 (4), 1728-1737 PubMed Direct Link PDF

Retinal Remodeling in Human Retinitis Pigmentosa. B.W. Jones, R.L. Pfeiffer, W.D. Ferrell, C.B. Watt, M. Marmor, R.E. Marc (2016)Experimental eye research 150, 149-165. PubMed Direct Link PDF

Store-Operated Calcium Entry In Müller Glia Is Controlled By Synergistic Activation Of TRPC And Orai Channels. T. Molnár, O. Yarishkin, P. Barabas, A. Iuso, B.W. Jones, R. Marc, T. Phuong, and D. Krizaj. 2016  Journal of Neuroscience 36 (11), 3184-3198 PubMed Direct LinkPDF

Eosinophilic Esophagitis in Two Patients with Systemic Sclerosis. T.M. Frech, K. Boynton, E. Downs-Kelly, B. Jones, J.D. Kriesel, K. Peterson 2016. Case reports in rheumatology 2016 PubMed PMCID PDF

Seasonal and post-trauma remodeling in cone-dominant ground squirrel retina. DK Merriman, BS Sajdak, W. Li, Jones BW 2016  Experimental Eye Research. doi 10.1016/j.exer.2016.01.011 PubMed Direct Link PDF

Development of Animal Models of Local Retinal Degeneration. H. Lorach, J. Kung, C. Beier, Y. Mandel, R. Dalal, P. Huie, J. Wang, S. Lee, A. Sher, B.W. Jones and D. Palanker (2015). 56(8): 4644-52. Invest Ophthalmol Vis Sci. PubMed Direct Link PDF

Heterotrimeric kinesin-2 (KIF3) mediates transition zone and axoneme formation of mouse photoreceptors. Jiang L, Wei Y, Ronquillo CC, Marc RE, Yoder BK, Frederick JM, Baehr W. 2015
J Biol Chem. 290:12765-78. PubMed PMID 25825494 PubMedCentral PMCID in process

The AII Amacrine Cell Connectome: A Dense Network Hub. R.E. Marc, J.R. Anderson, B.W. Jones, C. Sigulinsky and J. Scott Lauritzen (2014).  Front Neural Circuits. PubMed Direct Link PDF

High-resolution synaptic connectomics. Marc RE, Anderson JR, Jones BW, Sigulinsky C, Watt CB, Lauritzen JS 2015.  In New Techniques in Systems Neuroscience Springer. Douglass, Adam (Ed.) PDF

A Multi-Scale Computational Model For The Study of Retinal Prosthetic Stimulation. Kyle Loizos, Gianluca Lazzi, J. Scott Lauritzen, James R. Anderson, Bryan W. Jones and Robert E. Marc (2014).  IEEE Computer Graphics and Applications. PubMed Direct Link PDF

Retinal Prosthetics, optogenetics, and chemical photoswitches. R.E. Marc, R. Pfeiffer, B.W. Jones (2014). ACS Chem Neurosci. PubMed Direct Link PDF

Optogenetics for retinal disorders. Henriksen BS, Marc RE, Bernstein PS 2014
J Ophthalmic & Vision Research 9: 374-382 PubMed PMID 25667740 PubMedCentral PMCID PMC4307663

Synapse Classification and Localization in Electron Micrographs. V. Jagadeesh, J. Anderson, B.W. Jones, R.E. Marc, S. Fisher and B.S. Manjunath 2014 2013. Pattern Recognition Letters. Direct Link PDF

Quantitative Analyses of Retinal Vascular Area and Density after Different Methods to Reduce VEGF in a Rat Model of Retinopathy of Prematurity. Wang H, Yang Z, Jiang Y, Flannery JG, Hammond S, Kafri T, Vemuri SK, Jones B, Hartnett ME (2014). Invest Ophthalmol Vis Sci. PubMed Direct Link PDF

Robust Segmentation based Tracking using an Adaptive Wrapper for Inducing Priors. Vignesh Jagadeesh, James Anderson, B.W.Jones, Robert E. Marc, Steven K Fisher and B.S Manjunath (2013).  IEEE Trans Image Process. Direct Link PDF

Alternative Complement Pathway Deficiency Amerliorates Chronic Smoked-Induced Functional And Morphological Ocular Injury. A. Woodell, B. Coughlin, K. Kunchithapautham, S. Casey, T. Williamson, W.D. Ferrell, C. Atkinson, B.W.Jones, B. Rohrer (2013).  PLoS ONE. PubMed Direct Link PDF

Retinal Connectomics: Towards Complete, Accurate Networks. Marc RE, Jones BW, Watt CB, C. Sigulinsky, Anderson JR, Lauritzen JS (2013).  Prog Retin Eye Res. PubMed Direct Link PDF

Restoration of Retinal Structure and Function After Selective Photocoagulation. A. Sher, B.W. Jones, P. Huie, Y. Paulus, L.S. Leung, H. Nomoto, R.E. Marc, D. Palanker (2013). J Neurosci. PubMed Direct Link PDF

Mapping kainate activation of inner neurons in the rat retina. Nivison-Smith L, Sun D, Fletcher EL, Marc RE, Kalloniatis M 2013 J Comp Neurol 10.1002/cne.23305. [Epub ahead of print]
PubMed PMID 23348566 ::

Deimination restores inner retinal visual function in murine demyelinating disease. Enriquez-Algeciras M, Ding D, Mastronardi FG, Marc RE, Porciatti V, Bhattacharya SK 2013
J Clin Invest. 2013 Jan 2. doi:pii: 64811. 10.1172/JCI64811. PubMed PMID 23281397 :: PubMedCentral PMC3561814

The Role of ELOVL4 And Very Long Chain Polyunsaturated Fatty Acids In Mouse Models of Stargardt Type 3 Retinal Degeneration. P. Barabas, A. Liu, W. Xing, C-K. Jason Chen, Z. Tong, C. B. Watt, B.W. Jones, P. S Bernstein, D. Križaj (2013). Proc Natl Acad Sci U S A. PubMed Direct Link PDF

ON cone bipolar cell axonal synapses in the OFF inner plexiform layer of the rabbit retina. Lauritzen JS, Anderson JR, Jones BW, Watt CB, Mohammed S, Hoang JV, Marc RE (2013). J Comp Neurol. PubMed Direct Link PDF

Retinal Connectomics: A new era for connectivity analysis. Marc RE, Jones BW, Lauritzen JS, Watt CB, Anderson JR. 2013 New Visual Neurosciences.

Retinal Remodeling. B.W. Jones, M. Kondo, H. Terasaki, Y. Lin, M. McCall, R.E. Marc (July 2012). Jpn J Ophthalmol, 56(4), 289-306. PubMed Direct Link PDF

Computational molecular phenotyping of retinal sheet transplants to rats with retinal degeneration. Seiler MJ, Jones BW, Aramant RB, Yang PB, Keirstead HS, Marc RE (June 2012). Eur J Neurosci, 35(11), 1692-1704. PubMed Direct Link PDF

Building retinal connectomes. Marc RE, Anderson JR, Jones BW, Watt CB (April 2012). Curr Opin Neurobiol. PubMed Direct Link PDF

Rapid glutamate receptor 2 trafficking during retinal degeneration. Lin Y, Jones BW, Liu A, Vazquez-Chona FR, Lauritzen JS, Ferrell WD, Marc RE (February 2012).  Mol Neurodegener. Feb 10 doi: 10.1186. PubMed Direct Link PDF

Dysmorphic Photoreceptors in a P23H Mutant Rhodopsin Model of Retinitis Pigmentosa are Metabolically Active and Capable of Regenerating to Reverse Retinal Degeneration. D. Lee, F.V-Chona, W. Ferrell, B. Tam, B.W. Jones, R.E. Marc, O. Moritz (February 2012). J Neurosci, 32(6), 2121-2128. PubMed Direct Link PDF

Generation of an inbred miniature pig model of retinitis pigmentosa. Ross JW, Fernandez de Castro JP, Zhao J, Samuel M, Walters E, Rios C, Bray-Ward P, Jones BW, Marc RE, Wang W, Zhou L, Noel JM, McCall MA, DeMarco PJ, Prather RS, Kaplan HJ (January 2012). Invest Ophthalmol Vis Sci, 53(1), 501-507. PubMed Direct Link PDF

Online parameter estimation in dynamic Markov Random Fields for image sequence analysis. V Jagadeesh, BS Manjunath, J Anderson, B Jones, R Marc, SK Fisher (2012). ICIP. Direct Link PDF

Retinal Remodeling in the Tg P347L Rabbit, a Large-Eye Model of Retinal Degeneration.B.W. Jones, M. Kondo, H. Terasaki, C.B. Watt, K. Rapp, J. Anderson, Y. Lin, M.V. Shaw, J-H Yang, R.E. Marc (October 2011). J Comp Neurol, 519(14). PubMed Direct Link PDF

Retinoid Receptors Trigger Neuritogenesis in Retinal Degenerations. Y. Lin, B.W. Jones, A. Liu, J.F. Tucker, K. Rapp, L. Luo, W. Baehr, P.S. Bernstein, C.B. Watt, J-H Yang, M.V. Shaw, R.E. Marc (September 2011). FASEB J. PubMed Direct Link PDF

Increased expression of multifunctional serine protease, HTRA1, in retinal pigment epithelium induces polypoidal choroidal vasculopathy in mice. Jones A, Kumar S, Zhang N, Tong Z, Yang JH, Watt C, Anderson J, Amrita, Fillerup H, McCloskey M, Luo L, Yang Z, Ambati B, Marc R, Oka C, Zhang K, Fu Y 2011 Proc Natl Acad Sci U S A. 108:14578-83. Epub 2011 Aug 15 :: PubMed PMID 21844367:: PubMedCentral PMC3167497::

Proliferative reactive gliosis is compatible with glial metabolic support and neuronal function. Vazquez-Chona FR, Swan A, Ferrell WD, Jiang L, Baehr W, Chien WM, Fero M, Marc RE, Levine EM2011 BMC Neurosci 12(1):98-108. [Epub ahead of print] :: PubMed PMID 21985191::PubMedCentral PMC3203081::

Automatic mosaicking and volume assembly for high-throughput serial-section transmission electron microscopy. T. Tasdizen, P. Koshevoy, B. Grimm, J. Anderson, B.W. Jones, R.T. Whitaker, R.E. Marc (2010). J Neurosci Methods. PubMed Direct Link PDF

Exploring The Retinal Connectome. J.R. Anderson, B.W. Jones, C.B. Watt, M.V. Shaw, J-H. Yang, D. DeMill, J.S. Lauritzen, Y. Lin, Kevin D. Rapp, D. Mastronarde, P. Koshevoy, B. Grimm, T. Tasdizen, R. Whitaker, R.E. Marc (2010). Mol Vis. PubMed Direct Link PDF

Detection of neuron membranes in electron microscopy images using auto-context. Jurrus E, Paiva ARC, Watanabe S, Jorgensen EM, Anderson JR, Jones BW, Whitaker R, Marc R, Tasdizen T (2010). Med Image Anal. PubMed Direct Link PDF

The Viking viewer for connectomics: scalable multi-user annotation and summarization of large volume data sets. Anderson JR, Mohammed S, Grimm B, Jones BW, Koshevoy P, Tasdizen T, Whitaker R, Marc (2010). J Microsc. PubMed Direct Link PDF

Injury and Repair: Retinal Remodeling. Marc RE 2010 Encyclopedia of the Eye (Elsevier) Vol 2, pp: 414-420. PDF

Information Processing: Amacrine Cells. Marc RE 2010 Encyclopedia of the Eye (Elsevier) Vol 2, pp: 330-337. PDF

Synaptic Organization of the retina. Marc RE 2010 Adler’s Physiology of the Eye (Elsevier) in press.

2000-2009 [28]

A computational framework for ultrastructural mapping of neural circuitry. Anderson JR, Jones BW, Yang J-H, Shaw MV, Watt CB, Koshevoy P, Spaltenstein J, Jurrus E, Kannan UV, Whitaker R, Mastronarde D, Tasdizen T, Marc R 2008 PLoS Biol 7(3): e1000074 [doi:10.1371/journal.pbio.1000074].  PubMed Direct Link PDF

Trafficking of membrane proteins to cone but not rod outer segments is dependent on heterotrimeric kinesin-II. Avasthi P, Watt CB, Williams DS, Le YZ, Li S, Chen CK, Marc RE, Frederick JM, Baehr W. 2009 J Neurosci. 2009 Nov 11;29(45):14287-98.
PubMed PMID 19906976 PubMedCentral PMC 2788486

Functional Anatomy of the Retina. Marc RE 2009 Duane’s Foundations of Clinical Ophthalmology (Tasman and Jaeger). PDF

An optimal-path approach for neural circuit reconstruction. E. Jurrus, R. Whitaker, B. W. Jones, R. Marc, and T. Tasdizen (2008). IEEE Biomedical Engineering Days. 1609-1612. PubMedDirect Link PDF

Effect of shape and coating of a subretinal prosthesis on its integration with the retina.Experimental Eye Research Butterwick A, Huie P, Jones BW, Marmor MF, Marc RE, Palanker D. 2008. Experimental Eye Research. 2009 88(1):22-9 PubMed Direct Link PDF

Extreme Retinal Remodeling Triggered by Light Damage: Implications for AMD. RE Marc, BW Jones, CB Watt, F. Vazquez-Chona, DK Vaughan, DT Organisciak. Molecular Vision 14:782-806. PubMed Direct Link PDF . PubMed Direct Link PDF

Functional Neuroanatomy of the Retina. Marc RE 2008 Albert and Jakobiec’s Principles and Practice of Ophthalmology, 3rd edition (Eds Albert and Miller) Elsevier, pp. 1565-1592. PDF

Neural reprogramming in retinal degenerations. Marc RE, BW Jones, JR Anderson, K Kinard, DW Marshak, JH Wilson, TG Wensel, RJ Lucas 2007  Invest Ophthalmol Vis Sci. PubMed Direct Link PDF PubMed Direct Link PDF

Assembly of large three-dimensional volumes from serial-section transmission electron microscopy. Koshevoy P, Tasdizen T, Whitaker R, Jones BW, Marc RE. 2006 Proceedings of 2006 MICCAI Workshop on Microscopic Image Analysis with Applications in Biology. PDF

Review: Retinal Remodeling During Retinal Degeneration. Jones BW, Marc RE. Experimental Eye Research 2005, 81: 121-244. PubMed Direct Link PDF

Excitation mapping with the organic cation AGB2+. Marc RE, M Kalloniatis, and BW Jones. 2005. Vision Research, 45: 3454-3468. PubMed Direct Link PDF

Retinal remodeling. Jones BW, CB Watt and RE Marc. 2005. Clinical and Experimental Optometry 88: 282-291. PubMed Direct Link PDF

Chapter: Neural plasticity revealed by light-induced photoreceptor lesions. BW Jones, RE Marc, CB Watt, DK Vaughan, DT Organisciak. PDF  Amazon: Retinal Degenerative Diseases, Springer, (New York), pp. 405-410. 2005. Springer Retinal Degenerative Diseases, Springer, (New York), pp. 405-410. 2005.

Circuitry revisions triggered by photoreceptor degeneration. In Plasticity in the Visual system: Marc RE, BW Jones and CB Watt. 2005. Amazon: From Genes to Circuits. Eds, Pinaud et al., Springer, pp. 33-54. 2005.

Glutamate Transport by Retinal Müller Cells in Glutamate /Aspartate Transporter-knockout mice. Sarthy VP, L Pignataro, T Pannicke, M Weick, A Reichenbach, T Harada, K Tanaka and RE Marc 2005 Glia 49:184-196 PubMed PDF

Neural Remodeling in Retinal Degeneration. Marc RE, BW Jones, CB Watt and E Strettoi. Progress in Retinal and Eye Research, pp. 607-655 Sep; 22(5) 2003. PubMed Direct Link PDF

Functionally intact glutamate-mediated signaling in bipolar-cells of the Trkb knockout mouse retina. Rohrer B, R Blanco, RE Marc, MB Lloyd, D Bok, DM Schneeweis, LF Reichardt 2004 Visual Neurosci 21:703-13. PubMed PDF

Contribution of a glial glutamate transporter to GABA synthesis in the retina. Sarthy VP, RE Marc, L Pignataro, K Tanaka 2004 NeuroReport 15: 1895-1898 PubMed PDF

“Retinal Neurotransmitters” in The Visual Neurosciences. Marc RE 2004 (Chalupa and Werner, Eds.). MIT Press, pp 315-330. PDF

Phenotyping neurons with pattern recognition of molecular mixtures. Marc RE, BW Jones 2003 IEEE, Intermational Symposium on Signal Processing and its Applications, S1571. PDF

Retinal remodeling in inherited photoreceptor degenerations. Marc RE, BW Jones Molecular Neurobiology 28: 139-148 2003. PubMed Direct Link PDF

Retinal remodeling triggered by photoreceptor degenerations. Jones BW, Watt CB, Frederick JM, Baehr W, Chen CK, Levine EM, Milam AH, LaVail MM, Marc RE. Journal of Comparative Neurology pp. 1-16 Sep, 8;464(1) 2003. PubMed Direct Link PDF

Molecular phenotyping of retinal ganglion cells. RE Marc and BW Jones. The Journal of Neuroscience. pp 413-427 Jan, 15 22(2) 2002. PubMed Direct Link PDF

A review of: Retinal Cell Rescue. Marc RE 2002 – The Sixth Annual Vision Research Conference. Investigational Drugs: Weekly Highlights June 2002: 53-60. PDF

The importance of gamma-Glutamyl transferase in lung glutathione homeostasis and antioxidant defense. Joyce-Brady M, RE Marc, JC Jean 2002 Thiol Metabolism and Redox Regulation of Cellular Functions  (Pompella et al. Eds) IOS Press, 182-196.

Gamma-glutamyltransferase deficiency results in lung oxidant stress in normoxia. Jean JC, Y Liu, LA Brown, RE Marc, E Klings, M Joyce-Brady 2002 Am J Physiol Lung Cell Mol Physiol 283: 766-776. PubMed PDF

A molecular phenotype atlas of the zebrafish retina. Marc RE and D Cameron 2002 J Neurocytol. 30: 593-654. PubMed PDF

Fundamental GABAergic amacrine cell circuitries in the retina: Nested feedback, concatenated inhibition, and axosomatic synapses. Marc RE and WL Liu 2000 J Comp Neurol 425: 560-582.PubMed PDF


1990-1999 [18]

“The Structure of Vertebrate Retinas” Marc RE 1999 The Retinal Basis of Vision (Toyoda et al, Eds) Elsevier, Amsterdam, p 3-19. PDF

Kainate activation of horizontal, bipolar, amacrine and ganglion cells in the rabbit retina. Marc RE 1999 J Comp Neurol 407:65-76. PubMed PDF

Mapping glutamatergic drive in the vertebrate retina with a channel permeant organic cation. Marc RE 1999 J Comp Neurol 407:47-64. PubMed PDF

Amino Acid Signatures in the Detached Cat Retina. Marc RE, R Murry, SK Fisher, K Linberg, G Lewis. 1998 Invest Ophthalmol Vis Sci 39:1694-1702. PubMed

Amino Acid Signatures in the Normal Cat Retina. Marc RE, R Murry, SK Fisher, K Linberg, G Lewis, M Kalloniatis. 1998 Invest Ophthalmol Vis Sci 39:1685-1693. PubMed

Postsynaptic response kinetics are controlled by a glutamate transporter at cone photoreceptors. Gaal L, B Roska, SA Picaud, SM Wu, R Marc, FS Werblin 1998 J Neurophysiol 79:190-196.PubMed PDF

Amino acid signatures in the primate retina. Kalloniatis M, RE Marc, R Murry 1996 J Neurosci 16:6807-6829. PubMed PDF

Pattern recognition of amino acid signatures in retinal neurons. Marc RE, R Murry, SF Basinger 1995 J Neurosci 15:5106-5129. PubMed PDF

Interplexiform cell connectivity in the outer retina. Marc RE 1995 In Neurobiology of the Vertebrate Outer Retina (eds S Archer, MBA Djamgoz, S Vallerga). Chapman and Hall, London, pp 369-393. PubMed PDF

Neurochemical signatures revealed by glutamine labeling in the chicken retina. Kalloniatis MK, G Tomisch, RE Marc 1994 Visual Neurosci. 11:793-804. PubMed

Visualizing amino acids in the retina. Marc RE 1994 In The First Great Basin Symposium on Visual Science, U Utah Press, Vol. 1: 58-68.

New aspects of dopaminergic interplexiform cell organization in the goldfish retina. Van Haesendonck E, RE Marc, L Missotten 1993 J Comp Neurol 333:503-518. PubMed

Indoleamine accumulating amacrine cells in the rabbit retina contain GABA. Massey SC, SL Mills, RE Marc 1992 J Comp Neurol 322:275-291. PubMed

Glutamate antagonists that block hyperpolarizing bipolar cells increase the release of dopamine from turtle retina. Critz S, RE Marc 1992 Visual Neurosci 9:271-278. PubMed

Structural organization of GABAergic circuitry in ectotherm retinas. Marc RE 1992 In Mize R, Marc RE and Sillito, A (Eds), GABA in the Retina and Central Visual System, Elsevier, Amsterdam, pp 61-92.

Patterns of glutamate immunoreactivity in the goldfish retina. Marc RE, WLS Liu, M Kalloniatis, S Raiguel, E Van Haesendonck 1990 J Neuroscience 10:4006-4034. PubMed PDF

Interplexiform cells of the goldfish retina. Kalloniatis M, RE Marc 1990 J Comp Neurol 297:340-358. PubMed

GABA-ergic and glycinergic pathways in the inner plexiform layer of the goldfish retina. Muller JF and RE Marc 1990 J Comp Neurol 291:281-3. PubMed PDF


1980-1989 [21]

Evolution of retinal circuits. Marc RE 1989 In J. Erber, R. Menzel, H.-J. Pfluger, D. Todt (Eds.), Neural Mechanisms of Behavior, Proceedings of the 2nd International Congress of Neuroethology, Thieme Medical Publishers, Inc., N.Y., pp. 146-147.

Review: The anatomy of multiple GABAergic and glycinergic pathways in the inner plexiform layer of the goldfish retina. Marc RE 1989 In R. Weiler and N.N. Osborne (Eds.), Neurobiology of the Inner Retina , NATO ASI Series, Vol. H31a, Springer-Verlag, Berlin, pp 53-64.

Review: The role of glycine in the mammalian retina. Marc RE 1989 Progress in Retinal Research, Vol. 8 N. Osborne and G. Chader, Eds., Pergamon Press, London, pp. 67-107.

Serotonergic and Serotonin-Accumulating Neurons in the Goldfish Retina. Marc RE, WLS Liu, K Scholz, JF Muller 1988 J Neurosci 8:3427-3450. PubMed PDF

Norepinephrine is a pre-synaptic input to visual corpus callosum cells. Elberger A, RE Marc 1988 Neurosci Lttrs 84:167-172. PubMed

Gap junctions in the inner plexiform layer of the goldfish retina. Marc RE, WLS Liu, JF Muller 1988 Vision Res 28:9-24. PubMed PDF

Review: The development of retinal networks in Cell Biology of the Retina. Marc RE 1986 R Adler and D Farber, Eds., Academic Press, pp. 17-65.

Neurochemical stratification in the inner plexiform layer of the vertebrate retina. Marc RE 1986 Vision Res 26:223-238. PubMed

Review: The role of glycine in retinal circuitry in Retinal Transmitters and Modulators. Marc RE 1985 Models for the Brain Vol. 1, Wm Morgan, Ed, CRC Press, Boca Raton, FL, pp. 119-158.

Glycine-accumulating neurons in the human retina. Marc RE, WLS Liu 1985 J Comp Neurol 232: 241-260. PubMed

Horizontal cell synapses onto glycine-accumulating interplexiform cells. Marc RE, WLS Liu 1984 Nature 311:266-269. PubMed

Three distinct morphological classes of receptors in fish olfactory organs. Muller JF, RE Marc 1984 J Comp Neurol 222:482-495. PubMed

Identification of neurotransmitter candidates in the invertebrate and vertebrate photoreceptor. Lam DMK, J Fredericks, JG Hollyfield, PV Sarthy, RE Marc 1982 In The Evolution of Photoreceptors, J Westphall Ed., Raven Pres, NY, pp. 65-80.

Review: Chromatic organization of the retina in Cellular Aspects of the Eye. Marc RE 1982 D McDevitt, Ed., Academic Press, NY, pp. 435-473.

Retinal neurotransmitters, morphology and color coding. Marc RE 1982 Taniguchi Foundation Symposium. Color research and Application 7:155-158.

Spatial organization of neurochemically classified interneurons in the goldfish retina. Marc RE 1982 I. Local patterns. Vision Res 22:589-608. PubMed

Uptake of aspartic and glutamic acid by goldfish photoreceptors. Marc RE, DMK Lam 1981 Proc Natl Acad Sci USA 78:7185-7189. PubMed

Glycinergic pathways in the goldfish retina. Marc RE, DMK Lam 1981 J Neurosci 1: 152-165 PubMed

GABAergic horizontal cells in the teleost retina. Lam DMK, YYT Su, CA Chin, C Brandon, RE Marc, RM Lasater 1980 Brain Res Bull. 5:137-140

Retinal organization: Neurotransmitters as physiological probes. Lam DMK, RE Marc, PV Sarthy, CA Chin, YYT Su, C Brandon & JY Wu 1980 Neurochemistry 1:183-190.

Retinal colour channels and their neurotransmitters in Colour Deficiencies. Marc RE 1980 V, Adam Hilger Ltd, London, pp. 15-29.


1970-1979 [7]

Immunocytochemical localization of glutamic acid decarboxylase in the goldfish retina. Lam DMK, YYT Su, L Swain, RE Marc, C Brandon, JY Wu 1979 Nature 278:565-567. PubMed

GABAergic pathways in the goldfish retina. Marc RE, WK Stell, D Bok, DMK Lam 1978 J Comp Neurol 182:221-246. PubMed

Review: Glenn Fry Award Lecture: Chromatic patterns of cone photoreceptors. Marc RE 1977 Am. J. Optometry and Physiological Optics 54:212-225. PubMed

The chromatic organization of primate cones. Marc RE, HG Sperling 1977 Science 196:454-456.PubMed

The chromatic organization of the goldfish cone mosaic. Marc RE, HG Sperling 1976 Vision Res 16:1211-1224. PubMed

The color receptor identities of goldfish cones. Marc RE, HG Sperling 1976 Science 191:487-489.PubMed

Light transmission of cat and monkey eyelids. Crawford MLJ, RE Marc 1976 Vision Res 16:323-324.PubMed